COVID-19 Project

Under this project we have worked on building an application tool for the public/research community to expand there analysis on the world-wide pandemic of the Coronavirus Disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). As a major part of the project we have created a phylogenetic analysis and a covid browser. Please visit each page for more information for each sub project under the COVID-19 main project. The project is sponsored by NSF.

Phylogenetic Analysis

In this sub project we analyzed and visualized SARS-CoV 19 samples and implemented a tool where users can upload their .json files and view phylogenetic trees.

Take Me There

Covid Browser

In this project we have utilized and implemented a browser to upload and view mutations for samples collected from SARS-CoV 19 infected patients.

Take Me There

Acknowledgements

We would like to offer our special thanks to:

  1. Frank Esper, Center for Pediatric Infectious Disease, Cleveland Clinic Children’s, Cleveland Ohio
  2. Yu-Wei Cheng Robert J. Tomsich Pathology and Laboratory Medicine Institute, Cleveland Clinic,Cleveland Ohio
  3. Zheng Tu, Robert J. Tomsich Pathology and Laboratory Medicine Institute, Cleveland Clinic,Cleveland Ohio
  4. Dan Farkas, Robert J. Tomsich Pathology and Laboratory Medicine Institute, Cleveland Clinic,Cleveland Ohio
  5. Gary Procop, Robert J. Tomsich Pathology and Laboratory Medicine Institute, Cleveland Clinic,Cleveland Ohio
  6. Jennifer Ko,Robert J. Tomsich Pathology and Laboratory Medicine Institute, Cleveland Clinic, Cleveland Ohio
  7. Timothy A. Chan, Center for Immunotherapy and Precision Immuno-Oncology, Lerner Research Center, Taussig Cancer Institute, Cleveland Clinic, Cleveland, Ohio
  8. Sheriff Mossad, Department of Infectious Diseases, Respiratory Institute, Cleveland Clinic, Cleveland Ohio
  9. Brian Rubin, Robert J. Tomsich Pathology and Laboratory Medicine Institute, Cleveland Clinic, Cleveland, Ohio
  10. Cindy Martin,Cyberinfrastructure Engineer,UTech Research Computing and Cyberinfrastructure, Case Western Reserve University,Cleveland, Ohio
  11. Mike Warfe, Director,UTech Research Computing and Cyberinfrastructure, Case Western Reserve University,Cleveland, Ohio
  12. Hadrian Djohari,HPC Service Manager, UTech Research Computing and Cyberinfrastructure, Case Western Reserve University,Cleveland, Ohio
  13. E.M. Dragowsky,Computing Technologist,Scientist & Information Analyst, UTech Research Computing and Cyberinfrastructure, Case Western Reserve University,Cleveland, Ohio
  14. Nasir Yilmaz,IT Engineer, UTech Research Computing and Cyberinfrastructure, Case Western Reserve University,Cleveland, Ohio
  15. Derek Li,Department of Computer and Data Sciences, Case Western Reserve University, Cleveland Ohio and the College at the University of Chicago, Chicago,IL
  16. Erik A. Li, Department of Computer and Data Sciences, Case Western Reserve University, Cleveland Ohio and Solon High School, Solon, Ohio