These tools/code are available for noncommercial use free of charge. Other usage should contact Dr. Li (jingli@case.edu). All right are reserved.

1. PedPhase

This is an implementation of our haplotype inference algorithms for pedigree data. It tries to find a haplotype configuration with minimum number of recombinant, which is different from Ped_IBD. Please visit here for more information.

2. Ped_IBD

This is a program for recombination breakpoint identification, IBD inference and haplotype inference from pedigrees with many untyped members. It utilizes a HHM. MML is a program for haplotype inference by joint analysis of pedigree and population data. Please visit here for more information.

3. MAVEN

MAVEN is an online tool for visualization and functional analysis of genome-wide association results.

4 HapMiner

It is an implementation of our haplotype-based association mapping method for case-control data. Please visit here for more information.

5 GS

This is a computer program for generating samples for association studies.

DIR

The tool DIR is an online tool for candidate disease gene prioritization.

7 SVMiner

It is a structure variation detection tool.

8 VIP

This tool is a SNP variant detection tool from pooled DNAs.

9 DTECD

It is a decision tree-based SNP interaction detection tool.

10 Bellerophon

This is a program for detecting large scale genome rearrangements.